application imariscell Search Results


application imariscell  (Oxford Instruments)
99
Oxford Instruments application imariscell
(A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) <t>ImarisCell:</t> Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.
Application Imariscell, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/application+imariscell/Imaris/pmc09624194-219-31-28
Average 99 stars, based on 1 article reviews
application imariscell - by Bioz Stars, 2026-10
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(A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.

Journal: Developmental biology

Article Title: ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

doi: 10.1016/j.ydbio.2020.02.003

Figure Lengend Snippet: (A) The original image used for all softwares. (B) FIJI: visualization of 2D (left) and 3D (right) segmentation results of the binary watershed segmentation option. (C) CellProfiler: Visualization of the 2D (top) and 3D (below) monolayer segmentation results using IdentifyObjects and Measure modules. (D) ImarisCell: Visualization of the 2D (left) and 3D (right) segmentation results. (E) ShapeMetrics: visualization of the 2D (left) and 3D (right) watershed segmentation results.

Article Snippet: The performance of our new MATLAB-based pipeline, ShapeMetrics, was compared to multiple existing free programs including ImageJ/FIJI, CellProfiler ™ , and CellSegm as well as the commercially available Imaris and its application ImarisCell specifically developed for this type of 3D and 2D analysis of cells.

Techniques:

The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in <xref ref-type= Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells." width="100%" height="100%">

Journal: Developmental biology

Article Title: ShapeMetrics: A userfriendly pipeline for 3D cell segmentation and spatial tissue analysis

doi: 10.1016/j.ydbio.2020.02.003

Figure Lengend Snippet: The quantitative results of the comparison show that our code ShapeMetrics outputs very similar cell numbers and volumes as ImarisCell. Fiji, on the other hand, outputs a similar number of cells but the mean volume of the cells as well as the visualization in Fig. 7 reveal that the segmentation is not successful. CellProfiler is not applicable for 3D segmentation of cells.

Article Snippet: The performance of our new MATLAB-based pipeline, ShapeMetrics, was compared to multiple existing free programs including ImageJ/FIJI, CellProfiler ™ , and CellSegm as well as the commercially available Imaris and its application ImarisCell specifically developed for this type of 3D and 2D analysis of cells.

Techniques: Comparison